Nettet2 dager siden · • make the downloaded installer executab le (chmod +x Anaconda3-2024.02-Linux-x86_64.sh) ... Then, Trimmomatic aligns the supplied adapter sequences to the reads, and scores the whole . Nettet13. aug. 2024 · Trimmomatic is a tool for trimming Illumina FASTQ data and removing adapters. It performs a variety of useful trimming tasks for illumina paired-end and single ended data. The selection of trimming steps and their associated parameters are supplied on the command line.
illumiprocessor: parallel adapter and quality trimming
Nettet6. apr. 2024 · conda activate trimmomatic java -jar Trimmomatic-0.39\trimmomatic-0.39.jar Thereby, adjust Trimmomatic-0.39\trimmomatic-0.39.jar to point to the .jar … Nettet1. apr. 2016 · 1 Answer Sorted by: 0 That is the wrong package name, it should just be trimmomatic sudo apt-get install trimmomatic Will install your package. Share Improve this answer Follow answered Apr 1, 2016 at 10:41 Mark Kirby 18.1k 19 76 113 Add a comment Your Answer blunt crypto price
HPC:Trimmomatic - HPC wiki - University of Pennsylvania
NettetTo install this package run one of the following:conda install -c bioconda trimmomatic conda install -c "bioconda/label/broken" trimmomatic conda install -c … NettetThis module is a singularity container wrapper for quay.io/biocontainers/trimmomatic. A flexible read trimming tool for Illumina NGS data. After installing shpc you will want to install this container module: $ shpc install quay.io/biocontainers/trimmomatic Or a specific version: $ shpc install quay.io/biocontainers/trimmomatic:0.39--0 Nettet8. okt. 2024 · The short reads (total of 38,390,380; 100 bp paired-end reads) were analyzed using the Trimmomatic tool for quality control including adapter trimming. The resulting short reads (35,908,618 reads, >Q30) were processed for genome assembly using the Velvet assembly software (kmer-size of 17–31) [ 16 ]. blunt cone wraps